Supplementary data for:
Anna Oberle, Franziska Hanzer, Felix Kokocinski, Anna Ennemoser, Luca Carli, Enrico Vaccari, Markus Hengstschläger, Michael Feichtinger
Non-Invasive Preimplantation Genetic Testing for Aneuploidy (niPGT-A) Using Nanopore Sequencing on Spent Embryo Culture Medium: A Comparative Experimental Study.
The raw data (binned read counts of all samples used) can be accessed here.
The format of the files is explained in the following table:
| Column | Meaning |
|---|---|
| chrom | Region coordinates: Chromosome |
| start | InRegion coordinates: Start of the bin |
| end | Region coordinates: End of the bin |
| cn_change | Automatically detected copy-number change |
| genomic_mid | Region coordinates: Midpoint of the bin as a genome-wide coordinate |
| raw_counts | Read number overlapping bin |
| counts | Read number adjusted by in-silico reference |
| median | Read number after median-normalization |
| shrinker | Read number after adjusted with region median |
| counts_smooth | Read number after smoothing window |
| percentcounts | Read number as percentage of total reads |
The sample results per sequencing run can be found here.
The format of the files is explained in the following table:
| Column | Meaning |
|---|---|
| Run | Name of sequencing run |
| File | Internal sample ID |
| Sample | Sample ID as shown in the publication |
| Noise | Noise measure 1 |
| MAPD | Noise measure 2 |
| Total-Var | Noise measure 3 |
| NWert | Noise measure 4 |
| NNum | Noise measure 5 |
| QC | Automatically assigned QC status |
| Sex | Automatically detected sex |
| Autom. detektiert | Automatically detected karyotype |